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Impressive insect camouflage

posted by Jason Kottke   Sep 16, 2016

Meet the lichen katydid. Hailing from the forests of Central and South America, this insect has evolved over the millennia to blend in amazingly well with the lichens that populate the forest.

We Work Remotely

The internet of trees: how trees talk to each other underground

posted by Jason Kottke   Sep 15, 2016

In June, ecologist Suzanne Simard gave a talk at TED about her 30 years of research into how trees talk to each other. Underneath the forest floor, there is a communications network on which trees — even those from different species — trade carbon with each other, send warnings, and trade messages. Simard described one of her first experiments (from the transcript):

I pulled on my white paper suit, I put on my respirator, and then I put the plastic bags over my trees. I got my giant syringes, and I injected the bags with my tracer isotope carbon dioxide gases, first the birch. I injected carbon-14, the radioactive gas, into the bag of birch. And then for fir, I injected the stable isotope carbon-13 carbon dioxide gas. I used two isotopes, because I was wondering whether there was two-way communication going on between these species.

The idea was to use the isotopes to track whether the trees were trading carbon when some of them were shaded and less able to make their own energy.

The evidence was clear. The C-13 and C-14 was showing me that paper birch and Douglas fir were in a lively two-way conversation. It turns out at that time of the year, in the summer, that birch was sending more carbon to fir than fir was sending back to birch, especially when the fir was shaded. And then in later experiments, we found the opposite, that fir was sending more carbon to birch than birch was sending to fir, and this was because the fir was still growing while the birch was leafless. So it turns out the two species were interdependent, like yin and yang.

Fascinating. German forester Peter Wohlleben came out with a book this week called The Hidden Life of Trees: What They Feel, How They Communicate (Simard contributed a note to the book). From a Guardian review:

Trees have friends, feel loneliness, scream with pain and communicate underground via the “woodwide web”. Some act as parents and good neighbours. Others do more than just throw shade — they’re brutal bullies to rival species. The young ones take risks with their drinking and leaf-dropping then remember the hard lessons from their mistakes. It’s a hard-knock life.

The Monthly, Maclean’s, and Scribd all have excerpts of Wohlleben’s book if you’re interested.

Update: See also this episode of Radiolab, From Tree to Shining Tree. (via @Chan_ing)

Watch time lapse videos of bacteria evolving drug resistance

posted by Jason Kottke   Sep 09, 2016

Researchers at Harvard have come up with a novel way of studying how bacteria evolve to become drug resistant. They set up a large petri dish about the same shape as a football field with no antibiotics in the end zones and increasingly higher doses of antibiotics toward the center. They placed some bacteria in both end zones and filmed the results as the bacteria worked its way toward the center of the field, evolving drug resistance as it went. Ed Yong explains:

What you’re seeing in the movie is a vivid depiction of a very real problem. Disease-causing bacteria and other microbes are increasingly evolving to resist our drugs; by 2050, these impervious infections could potentially kill ten million people a year. The problem of drug-resistant infections is terrifying but also abstract; by their nature, microbes are invisible to the naked eye, and the process by which they defy our drugs is even harder to visualise.

But now you can: just watch that video again. You’re seeing evolution in action. You’re watching living things facing down new challenges, dying, competing, thriving, invading, and adapting — all in a two-minute movie.

Watch the video…it’s wild. What’s most interesting — or scary as hell — is that once the drug resistance gets going, it builds up a pretty good momentum. There’s a pause at the first boundary as the evolutionary process blindly hammers away at the problem, but after the bacteria “learn” drug resistance, the further barriers are breached much more quickly, even before the previous zones are fully populated.

Scientists discover giraffes are actually four separate species

posted by Jason Kottke   Sep 09, 2016

Giraffe Species

Suddenly, there are four species of giraffe now. Previously there was only one. Scientists have analyzed the genetic code of hundreds of giraffes in Africa and found much variation in their DNA, enough to split one species into four.

Some of the differences were as large or larger than the differences between brown bears and polar bears.

Despite their similar appearances, members of the different species don’t appear to mate with each other. It’s amazing that scientists didn’t know this until now.

The biggest war in animal history

posted by Jason Kottke   Aug 10, 2016

According to theoretical biologist Suzanne Sadedin, the biggest war in animal history (humans included) is happening right now.

Once upon a time there was a tiny brown ant who lived by a swamp at the end of the Paraná River in Argentina. Her name, Linepithema humile, literally means “humble” or “weak”. Some time during the late 1800s, an adventurous L. humile crept away from the swamp where giant river otter played and capybaras cavorted.

She stowed away on a boat that sailed to New Orleans. And she went to war.

Update: And bang, here’s the supporting science in the form of a 2010 study.

Here, we perform inter-continental behavioral analyses among supercolonies in North America, Europe, Asia, Hawaii, New Zealand and Australia and show that these far-flung supercolonies also recognize and accept each other as if members of a single, globally distributed supercolony. Furthermore, populations also possess similar genetic and chemical profiles. However, these ants do show aggression toward ants from South Africa and the smaller secondary colonies that occur in Hawaii and California. Thus, the largest and most dominant introduced populations are likely descended from the same ancestral colony and, despite having been established more than 100 years ago, have diverged very little. This apparent evolutionary stasis is surprising because, in other species, some of the most rapid rates of evolutionary change have occurred in introduced populations. Given the spatial extent of the Argentine ant society we report here, there can be little doubt that this intercontinental supercolony represents the most populous known animal society.

The “25 years and beyond” section of the Facebook product roadmap contains a single word, unlined twice in red ink: ants. Can ants be trained to look at ads though?

Update: Radiolab also did a segment on these ants. (via @minwoolee)

Update: Wow, the Argentine ant is having a bit of a moment…I didn’t expect this to be my most updated post of the week. Annalee Newitz just dropped a long article about their world domination: Meet the worst ants in the world.

UC Berkeley environmental scientist Neil Tsutsui helmed an effort to sequence the genome of L. humile, in part to find out where the invading group had originated. He and an international team of colleagues published the results of their analysis in 2011. They compared the genomes of Argentine ants in California to those of native populations, and Tsutsui told Ars that they were initially surprised by the results. “I was expecting Buenos Aires to be the source, but it was actually a city upstream called Rosario,” he said. “It turns out that in the late 19th century, when the ants were moving around, Rosario was actually a bigger shipping port than Buenos Aires. So it made more sense as a source for introduced populations.”

Genetic evidence supports the idea that the ants made their way from Port Rosario all across the globe. Subsequent sightings of the ants in the United States show that they also hitched rides on trains from New Orleans, ultimately arriving in California in 1904. Trucks probably transported them throughout the state. But how could such fragile creatures survive these journeys in giant machines and go on to found insectile empires? With their countless queens and nomadic lifestyle, they turned out to be the ultimate adapters.

Che Guevara and Lionel Messi are also from Rosario and have taken over the world in their own way. (via @tcarmody)

Body of Theseus

posted by Jason Kottke   Jun 29, 2016

How old are different parts of our bodies? Does anything stick around the entire time? The hair on our bodies lasts only a few years. Fingernails are fully replaced every six months. Your skin lasts 2-4 weeks. Even your blood and bones regenerate every so often. There’s at least one part of your body with lasts the whole time you’re alive, which I found somewhat surprising. See the ship of Theseus paradox.

The ship wherein Theseus and the youth of Athens returned from Crete had thirty oars, and was preserved by the Athenians down even to the time of Demetrius Phalereus, for they took away the old planks as they decayed, putting in new and stronger timber in their places, in so much that this ship became a standing example among the philosophers, for the logical question of things that grow; one side holding that the ship remained the same, and the other contending that it was not the same.

How do we know the lifespans of different cells in the body? Carbon-14 levels from nuclear testing done in the 50s and 60s.

Analysis of growth rings from pine trees in Sweden shows that the proliferation of atomic tests in the 1950s and 1960s led to an explosion in levels of atmospheric carbon 14. Now, Jonas Frisen and colleagues at the Karolinska Institute in Stockholm have taken advantage of this spike in C14 to devise a method to date the birth of human cells. Because this test can be used retrospectively, unlike many of the current methods used to detect cell proliferation, and because it does not require the ingestion of a radioactive or chemical tracer, the method can be readily applied to both in vivo and postmortem samples of human tissues.

Increasing the efficiency of photosynthesis

posted by Jason Kottke   Mar 28, 2016

Stewart Brand wrote a summary of a seminar given by Jane Langdale about how the efficiency of photosynthesis might be improved for some of the world’s plants, particularly rice.

Most plants use what’s called C3 photosynthesis to produce sugars and starch, but the process is not very efficient. Some plants, like corn and sugarcane, have evolved the capability to produce sugars and starch using the much more efficient C4 photosynthesis process. So if you could modify rice to use C4 instead of C3, yields would increase dramatically.

Rice is a C3 plant — which happens to be the staple food for half the world. If it can be converted to C4 photosynthesis, its yield would increase by 50% while using half the water. It would also be drought-resistant and need far less fertilizer.

You can read more about the efforts in developing C4 photosynthesis in Technology Review.

CRISPR, a cheap and accurate copy/paste for DNA

posted by Jason Kottke   Nov 13, 2015

Michael Specter has a truly fascinating piece in the New Yorker about CRISPR, a relatively new genetic tool for editing genes that geneticists are very excited about.

With CRISPR, scientists can change, delete, and replace genes in any animal, including us. Working mostly with mice, researchers have already deployed the tool to correct the genetic errors responsible for sickle-cell anemia, muscular dystrophy, and the fundamental defect associated with cystic fibrosis. One group has replaced a mutation that causes cataracts; another has destroyed receptors that H.I.V. uses to infiltrate our immune system.

The story has everything: the cheap copy/paste of DNA, easily editable mice, pig Hitler, “destroyer of worlds” overtones, and an incredible tale of science that could actually revolutionize (or ruin, depending on who you talk to) the world. I was shocked at how easy it is to do genetic research nowadays.

Ordering the genetic parts required to tailor DNA isn’t as easy as buying a pair of shoes from Zappos, but it seems to be headed in that direction. Yan turned on the computer at his lab station and navigated to an order form for a company called Integrated DNA Technologies, which synthesizes biological parts. “It takes orders online, so if I want a particular sequence I can have it here in a day or two,” he said. That is not unusual. Researchers can now order online almost any biological component, including DNA, RNA, and the chemicals necessary to use them. One can buy the parts required to assemble a working version of the polio virus (it’s been done) or genes that, when put together properly, can make feces smell like wintergreen. In Cambridge, I.D.T. often makes same-day deliveries. Another organization, Addgene, was established, more than a decade ago, as a nonprofit repository that houses tens of thousands of ready-made sequences, including nearly every guide used to edit genes with CRISPR. When researchers at the Broad, and at many other institutions, create a new guide, they typically donate a copy to Addgene.

And CRISPR in particular has quickened the pace. A scientist studying lung cancer mutations said of her research:

“In the past, this would have taken the field a decade, and would have required a consortium,” Platt said. “With CRISPR, it took me four months to do it by myself.”

Also recommended: Radiolab’s podcast on CRISPR from back in June.

Scaling laws and the speed of animals

posted by Jason Kottke   Oct 19, 2015

Animal Speed Scaling

A recent paper found that the time it takes for an animal to move the length of its own body is largely independent of mass. This appears to hold from tiny bacteria on up to whales — that’s more than 20 orders of magnitude of mass. The paper’s argument as to why this happens relies on scaling laws. Alex Klotz explains.

A well-known example is the Square-Cube Law, dating back to Galileo and described quite well in the Haldane essay, On Being the Right Size. The Square-Cube Law essentially states that if something, be it a chair or a person or whatever, were made twice as tall, twice as wide, and twice as deep, its volume and mass would increase by a factor of eight, but its ability to support that mass, its cross sectional area, would only increase by a factor of four. This means as things get bigger, their own weight becomes more significant compared to their strength (ants can carry 50 times their own weight, squirrels can run up trees, and humans can do pullups).

Another example is terminal velocity: the drag force depends on the cross-sectional area, which (assuming a spherical cow) goes as the square of radius (or the two-thirds power of mass), while the weight depends on the volume, proportional to the cube of radius or the first power of mass. As Haldane graphically puts it

“You can drop a mouse down a thousand-yard mine shaft; and, on arriving at the bottom, it gets a slight shock and walks away, provided that the ground is fairly soft. A rat is killed, a man is broken, a horse splashes.”

Scaling laws also come into play in determining the limits of the size of animals: The Biology of B-Movie Monsters.

When the Incredible Shrinking Man stops shrinking, he is about an inch tall, down by a factor of about 70 in linear dimensions. Thus, the surface area of his body, through which he loses heat, has decreased by a factor of 70 x 70 or about 5,000 times, but the mass of his body, which generates the heat, has decreased by 70 x 70 x 70 or 350,000 times. He’s clearly going to have a hard time maintaining his body temperature (even though his clothes are now conveniently shrinking with him) unless his metabolic rate increases drastically.

Luckily, his lung area has only decreased by 5,000-fold, so he can get the relatively larger supply of oxygen he needs, but he’s going to have to supply his body with much more fuel; like a shrew, he’ll probably have to eat his own weight daily just to stay alive. He’ll also have to give up sleeping and eat 24 hours a day or risk starving before he wakes up in the morning (unless he can learn the trick used by hummingbirds of lowering their body temperatures while they sleep).

Mother Nature invented the gear

posted by Jason Kottke   Sep 23, 2015

Nature Gears

Scientists have discovered that an insect has evolved something like a gearbox to coordinate its leg movements while jumping. That’s right, nature invented mechanical gears before man got around to it.

The gears in the Issus hind-leg bear remarkable engineering resemblance to those found on every bicycle and inside every car gear-box.

Each gear tooth has a rounded corner at the point it connects to the gear strip; a feature identical to man-made gears such as bike gears — essentially a shock-absorbing mechanism to stop teeth from shearing off.

The gear teeth on the opposing hind-legs lock together like those in a car gear-box, ensuring almost complete synchronicity in leg movement — the legs always move within 30 ‘microseconds’ of each other, with one microsecond equal to a millionth of a second.

This is critical for the powerful jumps that are this insect’s primary mode of transport, as even minuscule discrepancies in synchronisation between the velocities of its legs at the point of propulsion would result in “yaw rotation” — causing the Issus to spin hopelessly out of control.

“This precise synchronisation would be impossible to achieve through a nervous system, as neural impulses would take far too long for the extraordinarily tight coordination required,” said lead author Professor Malcolm Burrows, from Cambridge’s Department of Zoology.

Tree of 40 Fruit

posted by Jason Kottke   Jul 24, 2015

Artist Sam Van Aken is using grafting to create trees that bear 40 different kinds of fruit. National Geographic recently featured Van Aken’s Tree of 40 Fruit project:

The grafting process involves slicing a bit of a branch with a bud from a tree of one of the varieties and inserting it into a slit in a branch on the “working tree,” then wrapping the wound with tape until it heals and the bud starts to grow into a new branch. Over several years he adds slices of branches from other varieties to the working tree. In the spring the “Tree of 40 Fruit” has blossoms in many hues of pink and purple, and in the summer it begins to bear the fruits in sequence — Van Aken says it’s both a work of art and a time line of the varieties’ blossoming and fruiting. He’s created more than a dozen of the trees that have been planted at sites such as museums around the U.S., which he sees as a way to spread diversity on a small scale.

(via colossal)

Copy and paste, but for DNA

posted by Jason Kottke   Jul 22, 2015

No hunger. No pollution. No disease. Wired’s Amy Maxmen welcomes you to the age of copy and paste DNA editing and the end of life as we know it.

Genome editing started with just a few big labs putting in lots of effort, trying something 1,000 times for one or two successes. Now it’s something that someone with a BS and a couple thousand dollars’ worth of equipment can do. What was impractical is now almost everyday. That’s a big deal.

[I recently listened to Radiolab’s show on Crispr. Recommended. -jkottke]

Bacterial handprint

posted by Jason Kottke   Jun 08, 2015

Tasha Sturm, a lab technician at Cabrillo College, had her 8-year-old son put his handprint on a prepared petri dish and then incubated it for several days. This was the result:

Bacteria Handprint

If you’ll excuse me, I have to go wash my hands about 4,000 times. Bacteria is cooooool though:

Bacteria Handprint Closeup

(via colossal)

Superwolves, pizzly bears, emerging hybrid species, and climate change

posted by Jason Kottke   Jun 04, 2015

Because of climate change and other activities caused by humans (invasive species, habitat loss), hybridization of species is resulting in things like super-sized coyotes, pizzly bears (grizzly/polar bear hybrids), and other animals that may not be ideally suited to survive.

Some scientists and conservationists see the coywolf as a nightmare of the Anthropocene — a poster child of mongrelization as plants and animals reshuffle in response to habitat loss, climate change and invasive species. Golden-winged warblers increasingly cross with blue-winged warblers in the U.S. Northeast and eastern Canada. Southern flying squirrels hybridize with northern flying squirrels as the southern species presses northward in Ontario. Polar bears mate with grizzlies in the Canadian Arctic along the Beaufort Sea to produce “pizzly bears.”

All of this interbreeding upsets the conventional notion of species as discrete, inviolable entities. Moreover, some scientists and conservationists warn that hybridization will degrade biodiversity as unusual species are lost to genetic homogenization.

Partly scientists fear hybrids will be less fit than organisms that have evolved in place over eons. And often that is true, but the problem solves itself over time as hybrids lose out in the competitive race for survival.

Teaching evolution to religious students

posted by Jason Kottke   Mar 27, 2015

James Krupa teaches a mandatory biology class at the University of Kentucky and some students have a difficult time because Krupa refuses to shy away from evolution.

Rarely do I have a Kentucky student who learned about human evolution in high school biology. Those who did usually attended high schools in large urban centers like Louisville or Lexington. Given how easily it can provoke parents, the teaching of human evolution is a rarity in high school, so much so in Kentucky that it startled me when I first arrived.

The story of our evolutionary history captivates many of my students, while infuriating some. During one lecture, a student stood up in the back row and shouted the length of the auditorium that Darwin denounced evolution on his deathbed — a myth intentionally spread by creationists. The student then made it known that everything I was teaching was a lie and stomped out of the auditorium, slamming the door behind him. A few years later during the same lecture, another student also shouted out from the back row that I was lying. She said that no transitional fossil forms had ever been found — despite my having shared images of many transitional forms during the semester. Many of her fellow students were shocked by her combativeness, particularly when she stormed out, also slamming the door behind her. Most semesters, a significant number of students abruptly leave as soon as they realize the topic is human evolution.

I personally don’t understand the compatibility of evolutionary biology and Christianity Krupa emphasizes in his class, but I guess it helps to meet people halfway?

God, Darwin, and biology class

posted by Jason Kottke   Oct 01, 2014

Every year, evolutionary biologist and professor David Barash gives his students The Talk about how evolution and religion do and do not get along.

It’s irresponsible to teach biology without evolution, and yet many students worry about reconciling their beliefs with evolutionary science. Just as many Americans don’t grasp the fact that evolution is not merely a “theory,” but the underpinning of all biological science, a substantial minority of my students are troubled to discover that their beliefs conflict with the course material.

Until recently, I had pretty much ignored such discomfort, assuming that it was their problem, not mine. Teaching biology without evolution would be like teaching chemistry without molecules, or physics without mass and energy. But instead of students’ growing more comfortable with the tension between evolution and religion over time, the opposite seems to have happened. Thus, The Talk.

This is the sort of thing Barash talks about:

The more we know of evolution, the more unavoidable is the conclusion that living things, including human beings, are produced by a natural, totally amoral process, with no indication of a benevolent, controlling creator.

(via @TomJunod)

A Disappearing Planet

posted by Jason Kottke   Jul 15, 2014

From ProPublica, an alarming series of graphs and charts on animal extinction: A Disappearing Planet.

Animal species are going extinct anywhere from 100 to 1,000 times the rates that would be expected under natural conditions. According to Elizabeth Kolbert’s The Sixth Extinction and other recent studies, the increase results from a variety of human-caused effects including climate change, habitat destruction, and species displacement. Today’s extinction rates rival those during the mass extinction event that wiped out the dinosaurs 65 million years ago.

(via @SrikarDR)

The leaf that hates water

posted by Jason Kottke   Jun 20, 2014

Aatish Bhatia noticed a plant in his backyard whose leaves naturally repelled water. He took a sample to a friend who had access to a high-speed camera and an electron microscope to investigate what made the leaves so hydrophobic.

But how does a leaf become superhydrophobic? The trick to this, Janine explained, is that the water isn’t really sitting on the surface. A superhydrophobic surface is a little like a bed of nails. The nails touch the water, but there are gaps in between them. So there’s fewer points of contact, which means the surface can’t tug on the water as much, and so the drop stays round.

The leaf is so water repellant that drops of water bounce right off of it:

Immigrant life on Mars

posted by Jason Kottke   May 20, 2014

If there wasn’t life on Mars before, there might be now. Before NASA sent Curiosity to Mars, it was thoroughly cleaned of all traces of contaminants. But swabs of rover’s surfaces taken before it was sent to Mars have revealed 377 different strains of bacteria that potentially could have made the trip. Some of them may have even survived.

A study that identified 377 strains found that a surprising number resist extreme temperatures and damage caused by ultraviolet-C radiation, the most potentially harmful type. The results, presented today at the annual meeting of the American Society for Microbiology, are a first step towards elucidating how certain bacteria might survive decontamination and space flight.

The anternet

posted by Jason Kottke   Apr 04, 2014

Researchers at Stanford have observed that foraging harvester ants act like TCP/IP packets, so much so that they’re calling the ants’ behavior “the anternet”.

Transmission Control Protocol, or TCP, is an algorithm that manages data congestion on the Internet, and as such was integral in allowing the early web to scale up from a few dozen nodes to the billions in use today. Here’s how it works: As a source, A, transfers a file to a destination, B, the file is broken into numbered packets. When B receives each packet, it sends an acknowledgment, or an ack, to A, that the packet arrived.

This feedback loop allows TCP to run congestion avoidance: If acks return at a slower rate than the data was sent out, that indicates that there is little bandwidth available, and the source throttles data transmission down accordingly. If acks return quickly, the source boosts its transmission speed. The process determines how much bandwidth is available and throttles data transmission accordingly.

It turns out that harvester ants (Pogonomyrmex barbatus) behave nearly the same way when searching for food. Gordon has found that the rate at which harvester ants — which forage for seeds as individuals — leave the nest to search for food corresponds to food availability.

A forager won’t return to the nest until it finds food. If seeds are plentiful, foragers return faster, and more ants leave the nest to forage. If, however, ants begin returning empty handed, the search is slowed, and perhaps called off.

(via wordspy)

Neil deGrasse Tyson explains evolution

posted by Jason Kottke   Mar 23, 2014

The reboot of Cosmos has been solid but not spectacular so far, but the second episode contains as solid and clear an explanation of evolution as I’ve ever seen.

Even if evolution clashes with your world view, this is worth watching if only to understand what you’re aligned against (per Bret Victor’s advice). The third episode airs on Fox tonight and is about the creation of the scientific method.

There are lots of fish in the sea

posted by Jason Kottke   Mar 05, 2014

A group of marine biologists that has been recently studying mesopelagic fish (“fish that live between 100 and 1000m below the surface”) believes that 95% of fish biomass is unknown to humans. Marine dark matter. The problem lies with how fish have traditionally been counted and the enhanced visual and pressure senses of these fish.

He says most mesopelagic species tend to feed near the surface at night, and move to deeper layers in the daytime to avoid birds.

They have large eyes to see in the dim light, and also enhanced pressure-sensitivity.

“They are able to detect nets from at least five metres and avoid them,” he says.

“Because the fish are very skilled at avoiding nets, every previous attempt to quantify them in terms of biomass that fishing nets have delivered are very low estimates.

“So instead of different nets what we used were acoustics… sonar and echo sounders.”

A not-so-difficult prediction to make is that humans will find a way to catch these wary creatures, we’ll eat most of them, and then we’ll be back to where we are now: the world’s oceans running low on fish. (via @daveg)

Plant intelligence

posted by Jason Kottke   Dec 17, 2013

Plants eat light, grow almost everywhere on Earth, and make up 99% of the planet’s biomass. But do what extent do plants think? Or feel? Michael Pollan tackles the question of plant intelligence in a thought-provoking article for the New Yorker (sadly behind their paywall).

Indeed, many of the most impressive capabilities of plants can be traced to their unique existential predicament as beings rooted to the ground and therefore unable to pick up and move when they need something or when conditions turn unfavorable. The “sessile life style” as plant biologists term it, calls for an extensive and nuanced understanding of one’s immediate environment, since the plant has to find everything it needs, and has to defend itself, while remaining fixed in place. A highly developed sensory apparatus is required to locate food and identify threats. Plants have evolved between fifteen and twenty different senses, including analogues of our five: smell and taste (they sense and respond to chemicals in the air or on their bodies); sight (they react differently to various wavelengths of light as well as to shadow); touch (a vine or root “knows” when it encounters a solid object); and, it has been discovered, sound.

In a recent experiment, Heidi Appel, a chemical ecologist at the University of Missouri, found that, when she played a recording of a caterpillar chomping a leaf for a plant that hadn’t been touched, the sound primed the the plant’s genetic machinery to produce defense chemicals. Another experiment, dome in Mancuso’s lab and not yet published, found that plant roots would seek out a buried pipe through which water was flowing even if the exterior of the pipe was dry, which suggested that plants somehow “hear” the sound of flowing water.

One of the researchers featured in the article, Stefano Mancuso, has a TED talk available in which he outlines his case for plant intelligence:

The article also discusses if plants have feelings. If so, should we feel bad that our wifi routers might kill plants?

Update: Mancuso and Alessandra Viola have collaborated on a new book about the intelligence of plants, Brilliant Green: The Surprising History and Science of Plant Intelligence.

Dog breed “improvement”

posted by Jason Kottke   Dec 04, 2013

From a blog about the science of dogs, a comparison of photos of purebred dogs from 1915 to those of today. You can see how much the dogs have changed in just under 100 years, in some cases for the worse. For instance, the difference in the Bull Terrier (aka the Spuds MacKenzie dog) is marked and a bit disturbing:

Bull Terrier

Pure breeding has also introduced medical problems for some breeds.

The English bulldog has come to symbolize all that is wrong with the dog fancy and not without good reason; they suffer from almost every possible disease. A 2004 survey by the Kennel Club found that they die at the median age of 6.25 years (n=180). There really is no such thing as a healthy bulldog. The bulldog’s monstrous proportions makes them virtually incapable of mating or birthing without medical intervention.

(via @mulegirl)

Iconic insects are disappearing

posted by Jason Kottke   Nov 25, 2013

The monarchs are late. Usually by the 1st of November, the forests of central Mexico are swarming with them. Last year, they came in record low numbers, only 60 million. This year? A week late and only 3 million. And this happening to insects across the spectrum.

A big part of it is the way the United States farms. As the price of corn has soared in recent years, driven by federal subsidies for biofuels, farmers have expanded their fields. That has meant plowing every scrap of earth that can grow a corn plant, including millions of acres of land once reserved in a federal program for conservation purposes.

Another major cause is farming with Roundup, a herbicide that kills virtually all plants except crops that are genetically modified to survive it.

As a result, millions of acres of native plants, especially milkweed, an important source of nectar for many species, and vital for monarch butterfly larvae, have been wiped out. One study showed that Iowa has lost almost 60 percent of its milkweed, and another found 90 percent was gone. “The agricultural landscape has been sterilized,” said Dr. Brower.

The Human Body

posted by Jason Kottke   Aug 16, 2013

My friends at Tinybop have released their first app, The Human Body, in which “curious kids ages 4+ can see what we’re made of and how we work, from the beating heart to gurgling guts”. Kelli Anderson did the illustrations for the app and they look amazing. Can’t wait to try this out with Ollie and Minna.

The trees of Chernobyl

posted by Jason Kottke   Aug 09, 2013

This is what the trees look like near Chernobyl when you cut them down. It’s a biiiit tricky but see if you can spot when the nuclear plant disaster happened…

Chernobyl trees

Not surprisingly, researchers have found evidence that the radiation has affected the growth of trees near the accident site. From the paper:

Mean growth rate was severely depressed and more variable in 1987-1989 and several other subsequent years, following the nuclear accident in April 1986 compared to the situation before 1986. The higher frequency of years with poor growth after 1986 was not caused by elevated temperature, drought or their interactions with background radiation. Elevated temperatures suppressed individual growth rates in particular years. Finally, the negative effects of radioactive contaminants were particularly pronounced in smaller trees. These findings suggest that radiation has suppressed growth rates of pines in Chernobyl, and that radiation interacts with other environmental factors and phenotypic traits of plants to influence their growth trajectories in complex ways.

Liquid mammoth blood found

posted by Jason Kottke   May 29, 2013

A mammoth recently found in Siberia was so well preserved that when researchers were chipping it out of the ice, liquid blood flowed out.

Semyon Grigoriev, chairman of the university’s Museum of Mammoths and head of the expedition, said: “The fragments of muscle tissues, which we’ve found out of the body, have a natural red colour of fresh meat. The reason for such preservation is that the lower part of the body was underlying (sic) in pure ice, and the upper part was found in the middle of tundra. We found a trunk separately from the body, which is the worst-preserved part.”

The temperature was ten degrees celsius below zero when the mammoth was found, so the discovery of liquid blood was a shock. “It can be assumed that the blood of mammoths had some cryo-protective properties,” Grigoriev said. “The blood is very dark, it was found in ice cavities below the belly and when we broke these cavities with a pick, the blood came running out.”

More photos and information here. Bring on the mammoth clones, John Hammond. (via @carlzimmer)

Bees still dying at a fantastic rate

posted by Jason Kottke   Apr 01, 2013

Despite progress in recent years on causes and cures, colony collapse disorder has wreaked havoc on honeybee colonies across the country.

A mysterious malady that has been killing honeybees en masse for several years appears to have expanded drastically in the last year, commercial beekeepers say, wiping out 40 percent or even 50 percent of the hives needed to pollinate many of the nation’s fruits and vegetables.

Which is like, yeah, big whoop, it’s just bees, right? Except that:

The Agriculture Department says a quarter of the American diet, from apples to cherries to watermelons to onions, depends on pollination by honeybees.

Possible fossils found in meteorite fragments?

posted by Jason Kottke   Mar 11, 2013

Well, here’s something potentially interesting: researchers at Cardiff University think they have found fossils in meteorite fragments from Sri Lanka.

The most startling claims, however, are based on electron microscope images of structures within the stones (see above). Wallis and co say that one image shows a complex, thick-walled, carbon-rich microfossil about 100 micrometres across that bares similarities with a group of largely extinct marine dinoflagellate algae.

They say another image shows well-preserved flagella that are 2 micrometres in diameter and 100 micrometres long. By terrestrial standards, that’s extremely long and thin, which Wallis and co interpret as evidence of formation in a low-gravity, low-pressure environment.

Gotta take this with a massive grain of salt, but it will be interesting to see how this one plays out.

Update: One of the authors of this study holds some unusual views about life on Earth.

On May 24, 2003 The Lancet published a letter from Wickramasinghe, jointly signed by Milton Wainwright and Jayant Narlikar, in which they hypothesized that the virus that causes Severe Acute Respiratory Syndrome (SARS) could be extraterrestrial in origin and not originated from chickens.

Wickramasinghe and his mentor Fred Hoyle have also used their data to argue in favor of cosmic ancestry, and against evolution.

Like I said, big grain of salt. (thx, onno)