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kottke.org posts about science

Freeman, Feynman, and Hawking, autotuned

The giants of physics (and Morgan Freeman, who can be a giant of anything he wants) explain quantum mechanics using relatively simple terms and autotune.

(via devour)


Flowing water on Mars?

From late last week, news that NASA’s Mars Reconnaissance Orbiter has found possible evidence that there’s flowing water on Mars.

Dark, finger-like features appear and extend down some Martian slopes during late spring through summer, fade in winter, and return during the next spring. Repeated observations have tracked the seasonal changes in these recurring features on several steep slopes in the middle latitudes of Mars’ southern hemisphere.

“The best explanation for these observations so far is the flow of briny water,” said Alfred McEwen of the University of Arizona, Tucson. McEwen is the principal investigator for the orbiter’s High Resolution Imaging Science Experiment (HiRISE) and lead author of a report about the recurring flows published in Thursday’s edition of the journal Science.


New Cosmos series

This is a bit of a head-scratcher…the guy behind the Family Guy (Seth MacFarlane) is teaming up with Carl Sagan’s widow and Neil DeGrasse Tyson to do a sequel to the landmark science series, Cosmos. The series will air in primetime on Fox.

The producers of the show say the new series will tell “the story of how human beings began to comprehend the laws of nature and find our place in space and time.” They go on to boast: “It will take viewers to other worlds and travel across the universe for a vision of the cosmos on the grandest scale. The most profound scientific concepts will be presented with stunning clarity, uniting skepticism and wonder, and weaving rigorous science with the emotional and spiritual into a transcendent experience.”

I’ll be tuning in but will be pleasantly surprised if it does well in the ratings or is any good.


Urban evolution in NYC

Evolutionary biologists are increasingly studying organisms (like mice, fish, and bacteria) in urban areas like New York City to find out how they evolve to urban conditions.

Dr. Munshi-South and his colleagues have been analyzing the DNA of the mice. He’s been surprised to find that the populations of mice in each park are genetically distinct from the mice in others. “The amount of differences you see among populations of mice in the same borough is similar to what you’d see across the whole southeastern United States,” he said.


Fluorescing tattoo for tracking body chemicals

Using a modified iPhone and a fluorescing nanoparticle tattoo, researchers at Northeastern University have found a way to monitor chemicals in the blood without drawing blood.

The team begins by injecting a solution containing carefully chosen nanoparticles into the skin. This leaves no visible mark, but the nanoparticles will fluoresce when exposed to a target molecule, such as sodium or glucose. A modified iPhone then tracks changes in the level of fluorescence, which indicates the amount of sodium or glucose present. Clark presented this work at the BioMethods Boston conference at Harvard Medical School last week.

The tattoos were originally designed as a way around the finger-prick bloodletting that is the standard technique for measuring glucose levels in those with diabetes. But Clark says they could be used to track many things besides glucose and sodium, offering a simpler, less painful, and more accurate way for many people to track many important biomarkers.


Viking colonists?

Recent analysis of some Viking bones suggests that women were a significant part of the Viking settlement of England around 900 A.D.

So, the study looked at 14 Viking burials from the era, definable by the Norse grave goods found with them and isotopes found in their bones that reveal their birthplace. The bones were sorted for telltale osteological signs of which gender they belonged to, rather than assuming that burial with a sword or knife denoted a male burial.

Overall, McLeod reports that six of the 14 burials were of women, seven were men, and one was indeterminable. Warlike grave goods may have misled earlier researchers about the gender of Viking invaders, the study suggests. At a mass burial site called Repton Woods, “(d)espite the remains of three swords being recovered from the site, all three burials that could be sexed osteologically were thought to be female, including one with a sword and shield,” says the study.


Did Columbus cause The Little Ice Age?

I’m slowly working my way through Charles Mann’s 1493 and there are interesting tidbits on almost every page. One of my favorite bits of the book so far is a possible explanation of the Little Ice Age that I hadn’t heard before put forth by William Ruddiman.

As human communities grow, Ruddiman pointed out, they open more land for farms and cut down more trees for fuel and shelter. In Europe and Asia, forests were cut down with the ax. In the Americas before [Columbus], the primary tool was fire. For weeks on end, smoke from Indian bonfires shrouded Florida, California, and the Great Plains.

Burning like this happened all over the pre-Columbian Americas, from present-day New England to Mexico to the Amazon basin to Argentina. Then the Europeans came:

Enter now the Columbian Exchange. Eurasian bacteria, viruses, and parasites sweep through the Americas, killing huge numbers of people β€” and unraveling the millenia-old network of human intervention. Flames subside to embers across the Western Hemisphere as Indian torches are stilled. In the forests, fire-hating trees like oak and hickory muscle aside fire-loving species like loblolly, longleaf, and slash pine, which are so dependent on regular burning that their cones will only open and release seed when exposed to flame. Animals that Indians had hunted, keeping their numbers down, suddenly flourish in great numbers. And so on.

The regular fires and forest regrowth resulted in less carbon dioxide in the atmosphere and the atmosphere traps less heat. It’s like global warming in reverse.


Neanderthal sex made modern humans fitter

There is evidence that modern humans mating with Neanderthals helped humans spread out of Africa to distant parts of the globe.

While only 6 per cent of the non-African modern human genome comes from other hominins, the share of HLAs acquired during interbreeding is much higher. Half of European HLA-A alleles come from other hominins, says Parham, and that figure rises to 72 per cent for people in China, and over 90 per cent for those in Papua New Guinea.

This suggests they were increasingly selected for as H. sapiens moved east. That could be because humans migrating north would have faced fewer diseases than those heading towards the tropics of south-east Asia, says Chris Stringer of the Natural History Museum in London.


Leaf recognition software

LeafSnap is a new iPhone app that uses facial recognition techniques to identify trees based on photos of their leaves.

Leafsnap contains beautiful high-resolution images of leaves, flowers, fruit, petiole, seeds, and bark. Leafsnap currently includes the trees of New York City and Washington, D.C., and will soon grow to include the trees of the entire continental United States.

Wow. Garden Design has more info. (thx, claire)


Pendulum waves

Mesmerizing video of a series of pendulums moving in an out of sync with each other until at the end…well, I won’t spoil it.

(thx, john)


How babby’s fish face is formed

Whoa, watch the video at the top of this article to see how the human face develops in the womb from an age of one-month to ten weeks. It all just comes together right at the end!

If you watch it closely, you will see that the human face is actually formed of three main sections which rotate and come together in an unborn foetus.

The way this happens only really makes sense when you realise that, strange though it may sound, we are actually descended from fish.

The early human embryo looks very similar to the embryo of any other mammal, bird or amphibian β€” all of which have evolved from fish.

Your eyes start out on the sides of your head, but then move to the middle.

The top lip along with the jaw and palate started life as gill-like structures on your neck. Your nostrils and the middle part of your lip come down from the top of your head.

There is no trace of a scar; the plates of tissue and muscle fuse seamlessly. But there is, however, a little remnant of all this activity in the middle of your top lip β€” your philtrum.

(via hypertext)


Einstein was right. Again.

Spacetime.jpg

NASA’s just finished an impressive experiment designed to test Einstein’s general theory of relativity β€” specifically the “mass distorts spacetime” part:

Put a spinning gyroscope into orbit around the Earth, with the spin axis pointed toward some distant star as a fixed reference point. Free from external forces, the gyroscope’s axis should continue pointing at the starβ€”forever. But if space is twisted, the direction of the gyroscope’s axis should drift over time. By noting this change in direction relative to the star, the twists of space-time could be measured.

Gravity Probe B’s experiment was 47 years in the making, helped spawn 100 PhD theses, and required the invention of 13 brand-new technologies, including a “drag-free satellite.” The four gyroscopes in GP-B are “the most perfect spheres ever made by humans… If the gyroscopes weren’t so spherical, their spin axes would wobble even without the effects of relativity.”

NASA finished collecting the data in 2005; now they’ve crunched the numbers. And yes, Einstein was right. The gyroscopes wobble in just the way general relativity predicts.

The first and most famous empirical experiment testing Einstein’s theory was performed in 1919 by Arthur Eddington during a full solar eclipse. Photographs showed that the sun’s mass caused starlight to bend around it.

(Image by James Overduin, Pancho Eekels, and Bob Kahn via NASA.)


Molecules with silly or unusual names

Paul May keeps track of the dozens of molecules that have unusual names. Like moronic acid, betweenanene, and draculin:

Draculin is the anticoagulant factor in vampire bat saliva. It is a large glycoprotein made from a sequence of 411 amino acids.

(via prosthetic knowledge)


Science, short and sweet

Seed Magazine asked a number of thinkers to provide statements about their respective fields containing “the most information in the fewest words” a la Richard Feynman:

If, in some cataclysm, all of scientific knowledge were to be destroyed, and only one sentence passed on to the next generations of creatures, what statement would contain the most information in the fewest words? I believe it is the atomic hypothesis (or the atomic fact, or whatever you wish to call it) that all things are made of atoms-little particles that move around in perpetual motion, attracting each other when they are a little distance apart, but repelling upon being squeezed into one another. In that one sentence, you will see, there is an enormous amount of information about the world, if just a little imagination and thinking are applied.


SETI project on hiatus

Due to a lack of funding, SETI Institute shut down the radio telescope array they were using to look for evidence of extraterrestrial life outside our solar system.

The timing couldn’t be worse, say SETI scientists. After millenniums of musings, this spring astronomers announced that 1,235 new possible planets had been observed by Kepler, a telescope on a space satellite. They predict that dozens of these planets will be Earth-sized β€” and some will be in the “habitable zone,” where the temperatures are just right for liquid water, a prerequisite of life as we know it.

(via β˜…genmon)


The adventures of the Atomic Gardening Society

Not just a Cold War-era relic…

Atomic tomatoes

the use of radiation to introduce genetic changes in food (aka “atomic gardening”) is alive and well today.

What’s more, the Times adds, nearly 2,000 gamma radiation-induced mutant crop varieties have been registered around the world, including Calrose 76, a dwarf varietal that accounts for about half the rice grown in California, and the popular Star Ruby and Rio Red grapefruits, whose deep colour is a mutation produced through radiation breeding in the 1970s. Similarly, Johnson tells Pruned that “most of the global production of mint oil,” with an annual market value estimated at $930 million, is extracted from the “wilt-resistant ‘Todd’s Mitcham’ cultivar, a product of thermal neutron irradiation.” She adds that “the exact nature of the genetic changes that cause it to be wilt-resistant remain unknown.”

The atomic gardening photos from Life magazine in 1961 are kind of great.


More about the 10,000 hours thing

The article about Dan McLaughlin’s quest to go from zero-to-PGA Tour through 10,000 hours of deliberate practice got linked around a bunch yesterday. Several people who pointed to it made a typical mistake. Malcolm Gladwell wrote about the 10,000 hours theory in his book, he did not come up with it. It is not “Gladwell’s theory” and McLaughlin is not “testing Gladwell”. The 10,000 hours theory was developed and popularized by Dr. Anders Ericsson (here for instance) β€” who you may have heard of from this Freakonomics piece in the NY Times Magazine β€” before it became a pop culture tidbit by Gladwell’s inclusion of Ericsson’s work in Outliers.


New particle or just bad data?

Scientists at Fermilab have found a “suspicious bump” in their data from the Tevatron that may indicate the discovery of a new particle (not the Higgs boson) or a new force of nature or a mistake.

“Nobody knows what this is,” said Christopher Hill, a theorist at Fermilab who was not part of the team. “If it is real, it would be the most significant discovery in physics in half a century.”

We won’t have to wait too long to see if the bump is real…the LHC will reveal all soon.


Perhaps the best Reddit question ever

And that’s saying something. But look at this gem of a thread: I like big butts and I cannot lie, but is there some evolutionary reason as to why? Some of the answers:

My homeboys tried to warn me, but that butt you got makes me so confident of your current well-being and future child-rearing potential

So, ladies! (Yeah!) Ladies (Yeah!)

If you wanna roll in my Mercedes (Yeah!)

Then turn around! Stick it out! Even white boys have to make sure that their partner is of high genetic caliber so they can pass on their genes successfully.

My anaconda don’t want none unless you have a high likelihood of producing healthy offspring with a minimal chance of genetic disabilities, hun.

(via @stevenbjohnson)


All about nuclear meltdowns

I haven’t been keeping up with the Japan nuclear power plant situation as much as I want, but I wanted to pass along a few interesting articles. Over at Boing Boing, Maggie Koerth-Baker wrote a widely linked piece about how nuclear power plants work:

For the vast majority of people, nuclear power is a black box technology. Radioactive stuff goes in. Electricity (and nuclear waste) comes out. Somewhere in there, we’re aware that explosions and meltdowns can happen. Ninety-nine percent of the time, that set of information is enough to get by on. But, then, an emergency like this happens and, suddenly, keeping up-to-date on the news feels like you’ve walked in on the middle of a movie. Nobody pauses to catch you up on all the stuff you missed.

As I write this, it’s still not clear how bad, or how big, the problems at the Fukushima Daiichi power plant will be. I don’t know enough to speculate on that. I’m not sure anyone does. But I can give you a clearer picture of what’s inside the black box. That way, whatever happens at Fukushima, you’ll understand why it’s happening, and what it means.

MrReid, a physics teacher, writes about the situation at Fukushima:

Even with the release of steam, the pressure and temperature inside Unit 1 continued to increase. The high temperatures inside the reactor caused the protective zirconium cladding on the uranium fuel rods to react with steam inside the reactor to form zirconium oxide and hydrogen. This hydrogen leaked into the building that surrounded the reactor and ignited, damaging the surrounding building but without damaging the reactor vessel itself. Because the reactor vessel has not been compromised, the release of radiation should be minimal. It appears that a very similar situation has occurred at Unit 3 and that hydrogen is again responsible for the explosion seen there.

And this piece is a more meta take on the situation, What the Media Doesn’t Get About Meltdowns.

Of immediate concern is the prospect of a so-called “meltdown” at one or more of the Japanese reactors. But part of the problem in understanding the potential dangers is continued indiscriminate use, by experts and the media, of this inherently frightening term without explanation or perspective. There are varying degrees of melting or meltdown of the nuclear fuel rods in a given reactor; but there are also multiple safety systems, or containment barriers, in a given plant’s design that are intended to keep radioactive materials from escaping into the general environment in the event of a partial or complete meltdown of the reactor core. Finally, there are the steps taken by a plant’s operators to try to bring the nuclear emergency under control before these containment barriers are breached.


Moon cave!

Indian lunar orbiter Chandrayaan-1 has discovered a large cave on the Moon. Aside from the hey, cool, there’s a cave on the Moon factor, the other big feature of the cave is its constant and temperate temperature.

Temperatures on the moon swing wildly, from a maximum of 262 degrees Fahrenheit to a minimum of -292. The cave holds steady at a (relatively) comfortable -4, since the moon’s weather can’t penetrate its 40-foot-thick wall. It could also protect astronauts from “hazardous radiations, micro-meteoritic impacts,” and dust storms, according to paper published by the journal Current Science.

(via @juliandibbell)


Wrongly convicted

In 1981, Ray Towler was convicted of rape, kidnapping, and felonious assault of two young children and sentenced to life in prison. Twenty-nine years later, in 2010, DNA evidence proves he didn’t commit the crime and Towler is released from prison.

So many choices. Which car insurance. Which cereal. Which deodorant, toothpaste, toothbrush, soap, shampoo. Rows and rows of products. Varieties, sizes, colors. Which is cheaper? Which is better? What’s the best buy? Which gum to chew? When he went into prison there were, like, two kinds of chewing gum. Now there are a zillion. One of the small gifts he gives himself is trying all the gums. “I can spoil myself a little so long as I stay within my means,” he says. Papaya juice! Kiwi and strawberry nectar! Green tea! Arnold Palmer β€” he was a golfer when Towler went down. Now he is a drink, sweet and so incredibly thirst quenching.

He loves work. He got out May 5 and started working June 21. Hell, I’ve been vacationing for thirty years. He wears a smock and pushes a mail cart. He stops at all the cubicles, greets everyone with his friendly smile. Ray even loves commuting to work, especially now, in his new car, a black Ford Focus. He’s like a sixteen-year-old who can finally drive himself to school. It costs almost the same to park as it does to take the train.

File this one under “crying at work”.


A short history of the Earth

From physicist John Baez, a history of the major disasters that happened to the Earth: the Big Splat, the Late Heavy Bombardment, the Oxygen Catastrophe, and the Snowball Earth. The Big Splat is believed to have formed the Moon:

In 2004, the astrophysicist Robin Canup, at the Southwest Research Institute in Texas, published some remarkable computer simulations of the Big Splat. To get a moon like ours to form β€” instead of one too rich in iron, or too small, or wrong in other respects β€” she had to choose the right initial conditions. She found it best to assume Theia is slightly more massive than Mars: between 10% and 15% of the Earth’s mass. It should also start out moving slowly towards the Earth, and strike the Earth at a glancing angle.

The result is a very bad day. Theia hits the Earth and shears off a large chunk, forming a trail of shattered, molten or vaporized rock that arcs off into space. Within an hour, half the Earth’s surface is red-hot, and the trail of debris stretches almost 4 Earth radii into space. After 3 to 5 hours, the iron core of Theia and most of the the debris comes crashing back down. The Earth’s entire crust and outer mantle melts. At this point, a quarter of Theia has actually vaporized!

After a day, the material that has not fallen back down has formed a ring of debris orbiting the Earth. But such a ring would not be stable: within a century, it would collect to form the Moon we know and love. Meanwhile, Theia’s iron core would sink down to the center of the Earth.


How much is a planet worth?

Over at Boing Boing, Lee Billings has an interview with Greg Laughlin, an astrophysicist who recently came up with an equation for estimating the value of planets, a sort of Drake equation for cosmic economics.

This equation’s initial purpose, he wrote, was to put meaningful prices on the terrestrial exoplanets that Kepler was bound to discover. But he soon found it could be used equally well to place any planet-even our own-in a context that was simultaneously cosmic and commercial. In essence, you feed Laughlin’s equation some key parameters β€” a planet’s mass, its estimated temperature, and the age, type, and apparent brightness of its star β€” and out pops a number that should, Laughlin says, equate to cold, hard cash.

At the time, the exoplanet Gliese 581 c was thought to be the most Earth-like world known beyond our solar system. The equation said it was worth a measly $160. Mars fared better, priced at $14,000. And Earth? Our planet’s value emerged as nearly 5 quadrillion dollars. That’s about 100 times Earth’s yearly GDP, and perhaps, Laughlin thought, not a bad ballpark estimate for the total economic value of our world and the technological civilization it supports.


Auditioning replacements for the Moon

This video shows what various planets (Jupiter, Mars, etc.) would look like in the night sky if they orbited the Earth at the same distance as the Moon.

See also Imagining Earth with Saturn’s rings and Helvetica! In! Space!


Drinking water from ice cores

According to climate scientist Paul Mayewski, he and his team sometimes melt down unneeded ice cores that they’ve collected in places like Antarctica and drink the resulting water. The ice, as well as the air trapped within, can be more than a hundred thousand years old.

Probably the most exciting thing about it is when you have real ice β€” that’s where the snow has been gradually compacted and eventually formed into ice, and the density has increased. When that happens, if the ice is old, it will often trap air bubbles in it. Those air bubbles can contain carbon dioxide from ten thousand years ago or even a hundred thousand years ago. And when you put an ice cube of that ice in a glass of water, it pops. It has natural effervescence as those gas bubbles escape. You get a little a puff of air into your nostrils if you have your nose over the glass. It’s not as though it necessarily smells like anything β€” but when you think about the fact that the last time that anything smelled that air was a hundred thousand years ago, that’s pretty interesting.

For his wedding reception, Mayewski had water from “Greenland ice and Antarctic ice” for his guests to drink. (thx, finn)


The natural curves of human movement

No one has been able to figure out why humans can’t walk, swim, or even drive in straight lines without reference points. Instead, we go in circles:

(via df)


Superlinear scaling of cities

Luis Bettencourt of the Santa Fe Institute and his team have proposed a different way of looking at how exceptional cities are. The widely used per-capita is a linear measurement while cities’ attributes tend to scale nonlinearly (or superlinearly).

The researchers have shown, in fact, that with each doubling of city population, each inhabitant is, on average, 15 percent wealthier, 15 percent more productive, 15 percent more innovative, and 15 percent more likely to be victimized by violent crime regardless of the city’s geography or the decade in which you pull the data.

Remarkably, this 15 percent rule holds for a number of other statistics as well - so much so that if you tell Bettencourt and West the population of an anonymous city, they can tell you the average speed at which its inhabitants walk.

Scientists call this phenomenon “superlinear scaling.” Rather than metrics increasing proportionally with population - in a “linear,” or one-for-one fashion - measures that scale superlinearly increase consistently at a nonlinear rate greater than one for one.

“Almost anything that you can measure about a city scales nonlinearly, either showing economies in infrastructure or per capita gains in socioeconomic quantities,” Bettencourt says. “This is the reason we have cities in the first place. But if you don’t correct for these effects, you are not capturing the essence of particular places.”

Using this method, cities like LA, New York, and Houston are average while San Francisco and Boulder are above average.


Jenny McCarthy still confused

Jenny McCarthy just won’t call it quits on the whole vaccines cause autism thing. Cause she’s a mom! And moms love their children! And are strong! QED. And of course this was published by Huffington Post, the blog equivalent of Jenny McCarthy.


Autism study fraudulent

As if there was actually more evidence needed that vaccines don’t cause autism, the 1998 British study that linked autism to childhood vaccines was recently discovered to be an elaborate fraud. Not just incorrect, a fraud.

An investigation published by the British medical journal BMJ concludes the study’s author, Dr. Andrew Wakefield, misrepresented or altered the medical histories of all 12 of the patients whose cases formed the basis of the 1998 study β€” and that there was “no doubt” Wakefield was responsible.

“It’s one thing to have a bad study, a study full of error, and for the authors then to admit that they made errors,” Fiona Godlee, BMJ’s editor-in-chief, told CNN. “But in this case, we have a very different picture of what seems to be a deliberate attempt to create an impression that there was a link by falsifying the data.”

The full paper from BMJ is here.