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kottke.org posts about science

Running out of whys

A dialogue with Sarah, aged 3: in which it is shown that if your dad is a chemistry professor, asking “why” can be dangerous.

SARAH: Why?

DAD: Why do the molecules have a hydrophilic head and a hydrophobic tail?

SARAH: Yes.

DAD: Because the C-O bonds in the head are highly polar, and the C-H bonds in the tail are effectively non-polar.


Dolphins, the chefs of the sea

My grandpappy used to say to me, “Them dolphins is smart. The chefs of the sea they are!”** Scientists have observed bottlenose dolphins preparing cuttlefish for consumption.

Considering they can’t wield a knife or cleaver, dolphins make impressive butchers. Researchers in Australia recently observed a bottlenose performing a precise series of manoeuvres to kill, gut and bone a cuttlefish. The six-step procedure gets rid of the invertebrate’s unappetising ink and hard-to-swallow cuttlebone.

** This is not true.


A solution to our bee problem

Scientists are still trying to figure out what’s causing CCD, or Colony Collapse Disorder, a plague that’s killing off millions of bee across the United States. Among the possible culprits are a virus, increased vulnerability to disease due to breeding, overwork (hives of bees are trucked around the country for months to pollinate crops), increased exposure to all kinds of insecticides, and perhaps even all of the above.

Whatever the cause, Aaron Hirsh says, the way to keep our crops pollinated could be simple: restore habitats for wild bees near crops that need to be pollinated.

As the swift expansion of feral honeybees across the Americas shows, they are not especially picky about their habitat; most anything outside of parking lot or vast monoculture will do. And for native bees, habitat could be restored to suit the needs of whichever species are exceptionally good pollinators of local crops. Bumblebees, for instance, are the best pollinators of Maine blueberries, whereas blue orchard bees work well for California almonds.

Hirsh’s idea is reminiscent of Michael Pollan’s proposals for decreasing the present monoculture in American agriculture outlined in his recent books.

Update: See also Beekeeping Backwards. (thx, david)


David Attenborough gets hate mail?

David Attenborough, the voice of several thousand hours of nature films, gets hate mail from viewers who believe he should be crediting God for nature’s beauty.

Telling the magazine that he was asked why he did not give “credit” to God, Attenborough added: “They always mean beautiful things like hummingbirds. I always reply by saying that I think of a little child in east Africa with a worm burrowing through his eyeball. The worm cannot live in any other way, except by burrowing through eyeballs. I find that hard to reconcile with the notion of a divine and benevolent creator.”

(via cyn-c)


Two cardinals, both alike in dignity

Remarkable photo of a gynandromorphic cardinal with bilateral asymmetry, meaning that the left side of the bird is male and the right side is female…a red/brown split right down the middle.

Gynandromorphic Cardinal

Not Photoshopped, although the phenomenon is more common with butterflies. (thx, jason)

Update: Here’s a two-tone lobster caught in Maine in 2006. (thx, nicole & jim)


Physics doesn’t apply to much of the universe

In response to John Brockman’s Edge Annual Question for 2009:

What will change everything? What game-changing scientific ideas and developments do you expect to live to see?

Stuart Kauffman says that we’ll come to believe that much of the universe cannot be explained by or reduced to the fundamental laws of physics.

Let me point to the Adjacent Possible of the biosphere. Once there were lung fish, swim bladders were in the Adjacent Possible of the biosphere. Before there were multicelled organisms, the swim bladder was not in the Adjacent Possible of the biosphere. Something wonderful is happening right in front of us: When the swim bladder arose it was of selective advantage in its context. It changed what was Actual in the biosphere, which in turn created a new Adjacent Possible of the biosphere. The biosphere self consistently co-constructs itself into its every changing, unstatable Adjacent Possible.

If the becoming of the swim bladder is partially lawless, it certainly is not entailed by the fundamental laws of physics, so cannot be deduced from physics. Then its existence in the non-ergodic universe requires an explanation that cannot be had by that missing entailment. The universe is open.

(via david galbraith)


Video game physics

An examination of gravity in the Super Mario Bros series.

We determined that, generally speaking, the gravity in each Mario game, as game hardware has increased, is getting closer to the true value of gravity on earth of 9.8 m/s^2. However, gravity, even on the newest consoles, is still extreme.

In Super Mario 2, Mario experiences a g-force of 11 each time he falls from a ledge, a force that would cause mere humans to black out. In Madden 2006, the game’s fastest cornerbacks can run the 40 in 2.6 seconds. (via waxy)


The metal that remembers

Video of Nitinol wire, a shape memory alloy which returns to a pre-determined shape when heated.


Top 100 science stories of 2008

Discover has a list of the top 100 science stories of 2008 (scroll a bit for the whole list). Post-oil, LHC, ice on Mars, cheap genomes, quantum spookiness, etc.


Post-Ice Age ruins in Lake Michigan

Is there a mini Stonehenge under the waters of Lake Michigan?

In a surprisingly under-reported story from 2007, Mark Holley, a professor of underwater archaeology at Northwestern Michigan University College, discovered a series of stones - some of them arranged in a circle and one of which seemed to show carvings of a mastodon โ€” 40-feet beneath the surface waters of Lake Michigan. If verified, the carvings could be as much as 10,000 years old โ€” coincident with the post-Ice Age presence of both humans and mastodons in the upper midwest.


The President’s Guide to Science

Aired a few weeks before the 2008 election, The President’s Guide to Science is a 50-minute video featuring several prominent scientists โ€” Richard Dawkins, Michio Kaku, etc. โ€” offering their advice for the incoming US President, basically what they would teach the President about science. (via smashing telly)


Seed’s science photography portfolio

Seed Magazine has collected some of the wonderful science-themed photography which appears in the pages of the magazine into an online portfolio.

Seed Portfolio

Bacteria photo by Eshel Ben-Jacob.


Eating the Sun

Steven Johnson really likes a book called Eating the Sun: How Plants Power the Planet by Oliver Morton; he calls it his favorite book (so far) of 2008. From a Publishers Weekly review:

The cycle of photosynthesis is the cycle of life, says science journalist Morton (Mapping Mars). Green leaves trap sunlight and use it to absorb carbon dioxide from the air and emit life-giving oxygen in its place. Indeed, plants likely created Earth’s life-friendly oxygen- and nitrogen-rich biosphere. In the first part, Morton, chief news and features editor of the leading science journal, Nature, traces scientists’ quest to understand how photosynthesis works at the molecular level. In part two, Morton addresses evidence of how plants may have kick-started the complex life cycle on Earth. The book’s final part considers photosynthesis in relation to global warming, for, he says, the Earth’s plant-based balance of carbon dioxide and oxygen is broken: in burning vast amounts of fossil fuels, we are emitting more carbon dioxide than the plants can absorb. But Morton also explores the possibility that our understanding of photosynthesis might be harnessed to regain that balance.


How We Decide

News to me: Jonah Lehrer, author of Proust Was a Neuroscientist, has a new book coming out in February called How We Decide.

From the acclaimed author of Proust Was a Neuroscientist, a fascinating look at the new science of decision-making-and how it can help us make better choices. Since Plato, philosophers have described the decisionmaking process as either rational or emotional: we carefully deliberate or we “blink” and go with our gut. But as scientists break open the mind’s black box with the latest tools of neuroscience, they’re discovering that this is not how the mind works.Our best decisions are a finely tuned blend of both feeling and reason โ€” and the precise mix depends on the situation.When buying a house, for example, it’s best to let our unconscious mull over the many variables. But when we’re picking a stock, intuition often leads us astray.The trick is to determine when to lean on which part of the brain, and to do this, we need to think harder (and smarter) about how we think.


Jurassic Park not so far fetched

Scientists are saying that we can make ourselves a whoolly mammoth for as little as $10 million. All it takes is a mammoth genome, a lot of painstaking work, and much computing power.

If the genome of an extinct species can be reconstructed, biologists can work out the exact DNA differences with the genome of its nearest living relative. There are talks on how to modify the DNA in an elephant’s egg so that after each round of changes it would progressively resemble the DNA in a mammoth egg. The final-stage egg could then be brought to term in an elephant mother, and mammoths might once again roam the Siberian steppes.

The article also notes that if this works for the mammoth, it might also be possible to do the same for a Neanderthal. What an age we live in.


Five physics lessons for Obama

Five quick physics lessons for President-Elect Obama from the author of Physics for Future Presidents (@ Amazon). One of the lessons: nuclear power is the way to go.

It’s true that after 300 years, nuclear waste is still about 100 times more radioactive than the original uranium that was removed from the earth. But even this isn’t as scary as it sounds. If the waste is stored underground in such a way that there’s only a 10 percent chance that 10 percent of it will leak โ€” which should be more than doable โ€” the risk will be no worse than if we had never mined the uranium in the first place.

Muller asserts that safe nuclear power is a solved technical problem and that the use of it is a political issue.


Ant architecture

It’s worth sitting through the annoying “in a world…” narration to see the structure of an immense colony of ants. The scientists poured 10 tons of concrete down into an abandoned ant colony, waited for it to harden, and then spent weeks excavating the results.

During the construction of the giant structure, it’s estimated that the ants hauled 40 tons of dirt out of the holes, the equivalent of building the Great Wall of China. (via cyn-c)

Update: The ant colony was not abandoned. Nice work, scientists!


Feynman on school textbooks

Richard Feynman on the “perpetual absurdity” of school textbooks.

The same thing happened: something would look good at first and then turn out to be horrifying. For example, there was a book that started out with four pictures: first there was a windup toy; then there was an automobile; then there was a boy riding a bicycle; then there was something else. And underneath each picture it said, “What makes it go?”

I thought, “I know what it is: They’re going to talk about mechanics, how the springs work inside the toy; about chemistry, how the engine of the automobile works; and biology, about how the muscles work.”

It was the kind of thing my father would have talked about: “What makes it go? Everything goes because the sun is shining.” And then we would have fun discussing it:

“No, the toy goes because the spring is wound up,” I would say. “How did the spring get wound up?” he would ask.

“I wound it up.”

“And how did you get moving?”

“From eating.”

“And food grows only because the sun is shining. So it’s because the sun is shining that all these things are moving.” That would get the concept across that motion is simply the transformation of the sun’s power.

(via rw)


Survival of the fittest Playboy Playmate

In lean times, men look for women who can work and in times of plenty, they want women who can reproduce.

The Environmental Security Hypothesis says that in tough times men will prefer women who are good at production, generally older, taller, heavier, less curvaceous women with less body fat. In good times, they will prefer women who are good at reproduction, generally younger, shorter, lighter, more curvaceous women.

A pair of social psychologists looked for signs of this in the pages of Playboy magazine.

Consistent with Environmental Security Hypothesis predictions, when social and economic conditions were difficult, older, heavier, taller Playboy Playmates of the Year with larger waists, smaller eyes, larger waist-to-hip ratios, smaller bust-to-waist ratios, and smaller body mass index values were selected. These results suggest that environmental security may influence perceptions and preferences for women with certain body and facial features.


Banjo used in brain surgery

Due to a hand tremor, musician Eddie Adcock was having trouble playing the banjo. During the surgery to fix the problem, the doctors had Adcock play his banjo to isolate the problem in his brain and then they made the repair. Video here. (via delicious ghost)


Useful black holes

A list of 15 uses of tiny black holes, including hazardous waste disposal, cheap transport, and hanging posters without tacks.


HIV older than previously thought

A new study suggests that HIV jumped from apes to humans around the turn of the 20th century, which coincides with the development of colonial cities in sub-Saharan Africa.

HIV was and remains a “relatively poorly transmitted” virus, he said, so the key to the success of the virus was possibly the development of cities such as Leopoldville in the early 1900s.

The large numbers of people living in close proximity would have allowed more opportunity for new infections.

“I think the picture that has emerged here, is that changes the human population experienced may have opened to the door to the spread of HIV,” he said.


23 of the toughest math questions

DARPA is soliciting research proposals for people wishing to solve one of twenty-three mathematical challenges, many of which deal with attempting to find a mathematical basis underlying biology.

What are the Fundamental Laws of Biology?: This question will remain front and center for the next 100 years. DARPA places this challenge last as finding these laws will undoubtedly require the mathematics developed in answering several of the questions listed above.

(via rw)


Feeling cold after an icy glance?

Spreading nasty rumors can make people feel literally dirty and being socially excluded from a group can make you feel cold.

John Bargh, a psychologist at Yale who was not involved in the research, said the finding made “perfect sense.” In an e-mail message, he noted that a brain region called the insula tracks both body temperature and general psychological states, and it may be here where social perceptions and sensations of warmth or coldness are fused.


Interview with Charles Murray

Deborah Solomon recently interviewed Charles Murray for the NY Times. Murray is the author of the recent book, Real Education, which argues that 80% of all college students should not be pursuing a bachelor’s degree.

Even though the interview is pretty short, Solomon shows how Murray’s scientific views don’t jibe with his political views, namely that you don’t need smart, able people running the country.

What do you make of the fact that John McCain was ranked 894 in a class of 899 when he graduated from the U.S. Naval Academy? I like to think that the reason he ranked so low is that he was out drinking beer, as opposed to just unable to learn stuff.

What do you think of Sarah Palin? I’m in love. Truly and deeply in love.

She attended five colleges in six years. So what?

Why is the McCain clan so eager to advertise its anti-intellectualism? The last thing we need are more pointy-headed intellectuals running the government. Probably the smartest president we’ve had in terms of I.Q. in the last 50 years was Jimmy Carter, and I think he is the worst president of the last 50 years.

The cognitive dissonance inside Murray’s head must be deafening.


Old agriculture

New studies show that prehistoric agriculture may have taken much longer to develop than previously thought.

Until recently researchers say the story of the origin of agriculture was one of a relatively sudden appearance of plant cultivation in the Near East around 10,000 years ago spreading quickly into Europe and dovetailing conveniently with ideas about how quickly language and population genes spread from the Near East to Europe. Initially, genetics appeared to support this idea but now cracks are beginning to appear in the evidence underpinning that model.


Usain Bolt: 9.55 seconds

Some physicists have worked out what Usain Bolt’s time in the 100 meters in Beijing would have been if he hadn’t started celebrating before the finish line: 9.55 seconds. The original paper is here. I tried doing this the day after the race but even the HD footage wasn’t good enough to see the tick marks on the track and I didn’t want to mess around with all the angles. (via justin blanton)

Update: The folks at The Science of Sport lay out a much more sensible case relying on split times that Bolt would have run somewhere between 9.61 and 9.69. (thx, jim)


Big black holes

It looks like black holes can grow to be as massive as 50 billion suns. How massive is that? It’s approximately 99 duodecillion kilograms….which is a 99 followed by 39 zeros. (Put another way, if you had 99 duodecillion dollars, you could buy as many PlayStation 3s as you wanted. Blows your mind, right?)


Voice deepening gas

You know helium makes your voice go all squeaky? Adam from Mythbusters demonstrates that sulfur hexafluoride makes it do the opposite. Must get sulfur hexafluoride.


Bringing Pluto back to the solar system

Meg bought Ollie this ball a couple of weeks ago. It’s got all the planets of the solar system on it, plus the Sun. But no Pluto. That’s right, it’s barely been two years since Pluto was demoted to dwarf planet status and the toy manufacturers have already made the adjustment.

It saddens me that Ollie has to grow up in a world where Pluto isn’t considered a planet, although I take comfort that his textbooks probably won’t be updated by the time he’s in school. In the meantime, I’ve Sharpied Pluto onto his ball.

Pluto, back where it belongs

One ball at a time people, that’s how we win.